include: one folder per subsystem, and includes that name it

Sixty-five headers sat side by side in include/, so `#include "irq.h"`
said nothing about where irq.h was or what it belonged to, and errno.h,
stat.h and fcntl.h at the top shadowed the system's for any host tool
built with -I./include. They are in folders now -- arch/ core/ fs/
dev/ gfx/ net/ uapi/ (and ldls/ for the Linux driver layer) -- and
every include names the folder, as Linux's do: "core/proc.h".

Done mechanically and checked the hard way: the kernel built from this
tree disassembles identically to the one built from the tree before
it. The full image boots, and userland is the same set of programs.
Paths in docs and comments follow; docs/guides/layout.md has a table
of what is where, and tools/fix-includes.py rewrites old-style
includes from the folders in the tree, for code written before this.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01S1giNvrHTrPMPw7V6x1kQ4

tools/mkfs.c

@@ -44,10 +44,10 @@
 #define stat     xv6_stat
 #define sigset_t xv6_sigset_t
 #define dirent   schfs_dirent
-#include "../include/types.h"
-#include "../include/param.h"
-#include "../include/fs.h"
-#include "../include/stat.h"
+#include "../include/core/types.h"
+#include "../include/core/param.h"
+#include "../include/fs/fs.h"
+#include "../include/uapi/stat.h"
 #undef dirent
 #undef stat
 #include <dirent.h>
@@ -730,7 +730,7 @@ check_disk_space(void)
             freeblock, fssize, nmeta, nlog, ninodeblocks, nbitmap + nibitmap);
         fprintf(stderr,
             "  Which knob depends on the image:\n"
-            "    the main root image  -> FSSIZE in include/param.h\n"
+            "    the main root image  -> FSSIZE in include/core/param.h\n"
             "    the ramdisk root     -> RAMDISK_BLOCKS in the Makefile\n"
             "  Before growing it, check whether the content belongs here at all:\n"
             "  --exclude <path> drops a subtree, and --ninodes shrinks the\n"